tripal_jbrowse/README.md

Tripal JBrowse Integration

This package of modules integrates GMOD JBrowse into your Tripal site providing

• Tripal page integration via Tripal JBrowse Page and
• a user interface for JBrowse instance creation and management via Tripal JBrowse Management.

This powerful combination allows you to provide seamless genome browsing to your users in an administrator-friendly manner.

Quick Start

1. Download and install JBrowse in a web accessible location (e.g. DRUPAL_ROOT/tools/jbrowse).
2. Download and unpack this package in your Drupal modules directory (i.e sites/all/modules).
3. Enable "Tripal JBrowse Management" submodule through http://[your site]/admin/modules.
4. Create a JBrowse instance for your species of interest using the Admin > Tripal > Tripal JBrowse Management user interface.
5. Enable "Tripal-JBrowse Page Integration" submodule through http://[your site]/admin/modules.
6. Embedded versions will be created for all your instances created in step 4.

Documentation

Please visit our online documentation to learn more about installation, usage and features.

License & Acknowledgements

This module is open-source and licensed under GPLv3. Read full license.

Authors:

• Lacey-Anne Sanderson (@laceysanderson)
• Abdullah Almsaeed (@almasaeed2010)
• Joe West (@jwest60)
• Other contributors (https://github.com/tripal/tripal_jbrowse/graphs/contributors)

Copyright 2018 University of Saskatchewan and University of Tennessee Knoxville.

Citation:

Lacey-Anne Sanderson, Abdullah Almsaeed, Joe West, & Yichao Shen. (2019). tripal/tripal_jbrowse: Tripal JBrowse 3.0 (Version 7.x-3.0). Zenodo. http://doi.org/10.5281/zenodo.3564724.