tripal_jbrowse/tripal_jbrowse.module

<?php
/**
 * @file
 * Core functions of this module.
 */

/**
 * Implements hook_theme().
 */
function tripal_jbrowse_theme($existing, $type, $theme, $path) {

  $items = array(
    'node__jbrowse_instance' => array(
      // Don't specify the path in the template name.
      // Unless you have your template inside a directory within this module.
      'template' =>  'theme/node--jbrowse-instance',
      'variables' => array('node' => (object)array()),
    ),
  );

  return $items;
}

/**
 * Implements node preprocess hook.
 */
function tripal_jbrowse_preprocess_node(&$vars) {

  if ($vars['node']->type == 'jbrowse_instance') {

    $node = $vars['node'];

    // Determine the URL of the JBrowse based on the node properties
    $vars['url_prefix'] = $node->field_jburl['und'][0]['url'];
    $vars['location'] = (!empty($node->field_jbloc)) ? $node->field_jbloc['und'][0]['safe_value'] : '';
    $vars['tracks'] = (!empty($node->field_jbtracks)) ? $node->field_jbtracks['und'][0]['safe_value'] : '';
    $vars['url'] = $vars['url_prefix'] . "/?q=loc=" . $vars['location'] . "&tracks=" . $vars['tracks'];

    // Add inline JS for jbrowse to display an error.
    drupal_add_js('
      window.onerror=function(msg){
          if( document.body )
              document.body.setAttribute("JSError",msg);
      }
      if(window.process&&process.versions&&process.versions.electron) {
          window.electronRequire = require;
          delete window.require;
      }', 'inline');

    // Currently hardcoding the path just to get it working ;-)
    // My JBrowse is just unpacked in the files directory as you can see below.
    // @error failing to load chunks. Look into how to set root path for webpack?
    drupal_add_js('sites/default/files/JBrowse-1.14.1/dist/main.bundle.js');

  }
}