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Branch: 7.x-3.x
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Lacey-Anne Sanderson 4a8bbd8e6b Merge pull request #61 from tripal/phpunit-action 4 anos atrás
.github edcf263737 don't copy imaginary files. 4 anos atrás
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phpunit.xml 325fc5c26b Add Instance CRUD tests for tripal_jbrowse_mgmt 5 anos atrás

README.md

PHPUnit GitHub release (latest by date) Documentation Status

DOI

Tripal JBrowse Integration

This package of modules integrates GMOD JBrowse into your Tripal site providing

  • Tripal page integration via Tripal JBrowse Page and
  • a user interface for JBrowse instance creation and management via Tripal JBrowse Management.

This powerful combination allows you to provide seamless genome browsing to your users in an administrator-friendly manner.

Quick Start

  1. Download and install JBrowse in a web accessible location (e.g. DRUPAL_ROOT/tools/jbrowse).
  2. Download and unpack this package in your Drupal modules directory (i.e sites/all/modules).
  3. Enable "Tripal JBrowse Management" submodule through http://[your site]/admin/modules.
  4. Create a JBrowse instance for your species of interest using the Admin > Tripal > Tripal JBrowse Management user interface.
  5. Enable "Tripal-JBrowse Page Integration" submodule through http://[your site]/admin/modules.
  6. Embedded versions will be created for all your instances created in step 4.

Documentation

Please visit our online documentation to learn more about installation, usage and features.

License & Acknowledgements

This module is open-source and licensed under GPLv3. Read full license.

Authors:

Copyright 2018 University of Saskatchewan and University of Tennessee Knoxville.

Citation:

Lacey-Anne Sanderson, Abdullah Almsaeed, Joe West, & Yichao Shen. (2019). tripal/tripal_jbrowse: Tripal JBrowse 3.0 (Version 7.x-3.0). Zenodo. http://doi.org/10.5281/zenodo.3564724.